Related publications

• Nguyen, MP, Lehosmaa K, Martz F., Toth K, Koskimäki JJ, Häggman H, Pirttilä AM (2024) Dynamic change of fungal endophytic communities in bilberry Vaccinium myrtillus L. fruits over three ripening stages. FEMS Microbiology Ecology.
• Mc Cartney, A. M., Formenti, G., Mouton, A., De Panis, D., Marins, L. S., Leitão, H. G., ...Pirttilä, A. M., ... & Pellicer, J. (2024). The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics. npj Biodiversity, 3(1), 28.
• Nguyen, MP, Lehosmaa K, Toth K, Koskimäki JJ, Häggman H, Pirttilä AM (2024) Weather in two climatic regions shapes the diversity and drives the structure of fungal endophytic community of bilberry (Vaccinium myrtillus L.) fruit. Environmental Microbiome, 19 (7) https://doi.org/10.1186/s40793-024-00551-y.
• Baruah N., Haajanen R., Rahman M.T., Pirttilä AM., Koskimäki J.J. (2024) Biosynthesis of polyhydroxybutyrate by Methylorubrum extorquens DSM13060 is essential for intracellular colonization in plant endosymbiosis. Frontiers in Plant Science, 15, 1302705.
• Adebayo, A., Kiani, S., Ruotsalainen, A. L., Pirttilä, A. M., & Lehosmaa, K. (2023) Growth of floating hook-moss (Warnstorfia fluitans) differs with nutrient and water flow adjustments in greenhouse and cold room conditions. Heliyon, 9(1).
• Pirttilä A.M., Brusila V., Koskimäki J.J., Wäli P., Ruotsalainen AL., Mutanen M., Markkola A.M. (2023) Exchange of microbiomes in plant-insect herbivore interactions. Mbio, 14(2), e03210-22.
• Pirttilä A.M., Mohammadparast Tabas H., Baruah N, Koskimäki J. (2021) Biofertilizers and biocontrol agents for agriculture: How to identify new potent strains and traits. Microorganisms, 9(4): 817.
• Podolich O, Prekrasna E, Parnikoza I, Voznyuk T, Zubova G, Zaets I, Miryuta N, Myryuta G, Poronnik O, Kozeretska I, Kunakh V, Pirttilä AM, Dykyi E, Kozyrovska N (2021) First record of the endophytic bacteria of Deschampsia antarctica E. Desv. from two distant localities of the maritime Antarctica, Polar Biology 11:134-153.
• Nguyen MP, Martz F, Lehosmaa K, Koskimäki JJ, Parkkinen H, Pirttilä AM, Häggman H (2021) Host species shape the community structure of culturable endophytes in fruits of wild berry species (Vaccinium myrtillus L., Empetrum nigrum L. and Vaccinium vitis-idaea L.). FEMS microbiology ecology, 97(8), fiab097.
• Koskimäki, J.J., Pohjanen J., Fester T., Kvist, J., Podolich O., Fluch, S., Häggman, H., Pirttilä A. M. (2021) The meristem-associated endosymbiont Methylobacterium extorquens DSM13060 reprograms development and stress responses of pine seedlings. Tree Physiol. 42:391-410. 10.1093/treephys/tpab102.
• 71. Müller-Santos, M., Koskimäki, J. J., Alves, L. P. S., de Souza, E. M., Jendrossek, D., & Pirttilä, A. M. (2021) The protective role of PHB and its degradation products against stress situations in bacteria. FEMS Microbiology Reviews, 5;45(3):fuaa058.
• Lavrinienko A, Jernfors T, Koskimäki JJ, Pirttilä AM, Watts PC. (2021) Does intraspecific variation in rRNA copy number confound interpretation of microbial community assessment? Trends in Microbiology 29:19-27.
• Koivusaari P, Tejesvi MV, Tolkkinen M, Markkola A, Mykrä H and Pirttilä AM (2019) Fungi Originating From Tree Leaves Contribute to Fungal Diversity of Litter in Streams. Front. Microbiol. 10:651.
• Koivusaari P, Pohjanen J, Wäli P., Ahonen S, Suokas M, Koskimäki J, Tejesvi MV, Pirttilä AM (2018) Mountain birch recovered from moth herbivory harbors different endophyte communities in sprout bud meristems than mature trees. Tree Physiol., 38(9):1437-1444.
• Edesi J, Pirttilä AM, Häggman H (2017) Modified light spectral conditions prior to cryopreservation alter growth characteristics and cryopreservation success of potato (Solanum tuberosum L.) shoot tips in vitro. Plant Cell Tissue Org. Cult. 128: 409-421
• Pirttilä AM (2016) Commentary: Agroforestry leads to shifts within the gammaproteobacterial microbiome of banana plants cultivated in Central America. Front. Microbiol. 7:656.
• Koskimäki JJ, Kajula M, Hokkanen J, Ihantola E-L, Kim JH, Hautajärvi H, Hankala E, Suokas M, Pohjanen J, Podolich O, Kozyrovska N, Turpeinen A, Pääkkönen M, Mattila S, Campbell BC, Pirttilä AM (2016) Methyl-esterified 3- hydroxybutyrate oligomers protect bacteria from hydroxyl radicals. Nature Chemical Biology, 12: 332–338
• Ardanov P, Lyashchenko S, Karppinen K, Häggman H, Kozyrovska NO, Pirttilä AM (2016) Effects of Methylobacterium sp. on emergence, yield, and disease prevalence in three cultivars of potato (Solanum tuberosum L.) were associated with the shift in endophytic microbial community. Plant and Soil 405: 299–310
• Tejesvi MV, Picart P, Kajula M, Hautajärvi H, Ruddock L, Kristensen HH, Tossi A, Sahl HG, Ek S, Mattila S, Pirttilä AM (2016) Identification of antibacterial peptides from endophytic microbiome. Appl. Microbiol. Biotech. 100: 9283–9293
• Kauppinen M, Saikkonen K, Helander M, Pirttilä AM, Wäli P.R. (2016)  Epichloe grass endophytes and sustainable agriculture in changing climate. Nature Plants 2:15224.
• Tejesvi MV, Andersen B, Antcheva N, Brinch KS, Koskimäki JJ, Kristensen HH, Tossi A and Pirttilä AM (2016) The intracellular meristem endophyte of Scots pine Methylobacterium extorquens DSM13060 harbors antimicrobial peptides active towards pathogenic bacteria. J. Microb. Biochem. Technol. 8:1.
• Hardoim P, van Overbeek L, Berg G, Pirttilä AM, Compant S, Campisano A, Döring M, Sessitsch A (2015) The hidden world within plants: ecological and evolutionary considerations for defining functioning of microbial endophytes. MMBR 79: 293-320.
• Podolich O, Ardanov P, Zaets I, Pirttilä AM, Kozyrovska N (2015) Reviving of the endophytic bacterial community as a putative mechanism of plant resistance. Plant and Soil, 388: 367-377.
• Koskimäki JJ, Pirttilä AM, Ihantola, E-L, Halonen O, Frank C (2015) The intracellular Scots pine shoot symbiont Methylobacterium extorquens DSM13060 aggregates around the host nucleus and encodes eukaryote-like proteins. mBio 6(2):e00039-15.
• Pohjanen J, Koskimäki JJ, Sutela S, Ardanov P, Suorsa M, Niemi K, Sarjala T, Häggman H., Pirttilä AM (2014) The interaction with ectomycorrhizal fungi and endophytic Methylobacterium affects the nutrient uptake and growth of pine seedlings in vitro. Tree Physiol. 34 (9), 993-1005.
• Pirttilä, A.M., Sorvari, S. (2011) Prospects and Applications for Plant-Associated Microbes. A Laboratory Manual, Part B: Fungi. Biobien Innovations, Turku, Finland, 328 p. Buy at Google Books
• Pirttilä, A.M., Frank, A. C. (2011) Endophytes of Forest Trees: Biology and Applications. Springer Forestry Sciences, Vol 80, 1st Ed., 319 p.
• Sorvari, S., Pirttilä, A.M. (2008) Prospects and Applications for Plant-Associated Microbes. A Laboratory Manual, Part A: Bacteria. Biobien Innovations, Turku, Finland. 383 pp. Buy at Google Books