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- Tejesvi, M.V., Ruotsalainen, A.L., Markkola, A.M., Pirttilä, A. M. (2010) Root endophytes along a primary succession gradient in northern Finland. Fungal Diversity 41:125-134.
- Kajula, M., Tejesvi, M., Kolehmainen, S., Mäkinen, A., Hokkanen J., Mattila, S., Pirttilä, A.M. (2010) The siderophore ferricrocin produced by specific foliar endophytic fungi in vitro. Fungal Biology 114: 248-254.
- Kämäräinen-Karppinen T, Virtanen E, Rokka VM, Pirttilä AM (2010) Novel bioreactor technology for mass propagation of potato microtubers. J. Plant Biotechnol.101:245-249.
- Podolich, O., Laschevskyy, V., Ovcharenko, L., Kozyrovska, N., Pirttilä, A.M. (2009) Methylobacterium sp. resides in unculturable state in potato tissues in vitro and becomes culturable after induction by Pseudomonas fluorescens IMGB163. J. Appl. Microbiol. 106:728-737.
- Sorvari, S., Pirttilä, A.M. (2008) Prospects and Applications for Plant-Associated Microbes. A Laboratory Manual, Part A: Bacteria. Biobien Innovations, Turku, Finland. 383 pp.
- Pirttilä, A.M, Podolich, O., Koskimäki, J.J., Hohtola, E., Hohtola, A. (2008) Role of Origin and Endophyte Infection in Browning of Bud-Derived Tissue Cultures of Scots pine (Pinus sylvestris L.). Plant Cell Tiss. Org. Cult. 95:47-55.
- Pirttilä, A.M., Pospiech, H., Laukkanen H., Myllylä R., Hohtola, A. (2005) Seasonal variation in location and population structure of endophytes in buds of Scots pine. Tree Physiol.25:289-297.
- Pirttilä, A.M., Joensuu, P., Pospiech, H., Jalonen, J., Hohtola, A. (2004) Bud endophytes of Scots pine produce adenine derivatives and other compounds that affect morphology and mitigate browning of callus cultures. Physiol. Plant. 121:305-312.
- Pirttilä, A. M., Laukkanen, H., Pospiech, H., Myllylä, R., Hohtola, A. (2003) Two endophytic fungi in different tissues of Scots pine buds (Pinus sylvestris L.). Microbial Ecology 45:53-62.
- Pirttilä, A. M., Laukkanen, H., Hohtola A. (2002) Chitinase production in pine callus (Pinus sylvestris L.): a defence reaction against endophytes? Planta 214: 848-852.
- Pirttilä, A. M., Laukkanen, H., Pospiech, H., Myllylä, R., Hohtola, A. (2000) Detection of intracellular bacteria in the buds of Scotch pine (Pinus sylvestris L.) by in situ hybridization. Appl. Environ. Microbiol. 66: 3073 - 3077.